--list enables people to list content of their modules.
Indentation makes easier visual recognition of the
content.

--clean forces hdlmake to remove modules fetched
from repositories. All unneeded folders are removed
either.

Hdlmake will now produce makefiles that have
correct dependencies for .sv and .v files.
vcom_opt variable from manifests will be taken
into account when looking for files from
`include clauses