Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

- Move subsections "Autonegotiation of extension" and "BMCA configuration"
  to the section "TIming COnfiguration"
- Rename "Other Deployments" to "Fiber parameter matching"

The part of the document that describes each configuration item
(chapter "Configuration of the Device") is separated from the
part that describes more in details behavior of the device,
give more info about the configuration itself, the relations
between items, etc. It is now in the chapter "Operation of the
Device".

NOTE: I tried to take the content of Apendix B on time and
frequency sources and inject it in this chapter under "Time
and frequency sources of Grandmaster" but the result required
too many levels of embedded sub-sections (not supported) and
IMHO it is important that one can find reference to this info
direclty in the index page.

[DOC #362] doc/wrs-user-manual: tx_phase_cal.conf, NTP multi-source, IP in UDP, NTP description, NMEA, IRIG

- Number ports as 01-12 in /wr/etc/tx_phase_cal.conf -> Maciej
- assignment of IP address for L3 ptp -> Maciej
- added description of NTP
- updates to IRIG-B and NMEA

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Adam Wujek based on Harvey Leicester's description.

[DOC #362] doc/wrs-user-manual: Add to list of new features by v8.0 and start documenting time and freq sources

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Maciej Lipinski <maciej.lipinski@cern.ch>
Signed-off-by: Quentin Genoud <quentin.genoud@cern.ch>
Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

[FEATURE: #148

] userspace/tools/wrs_ext_pps_latency: Support aligning the PPS out to PPS input in GM

1. Add new paramter CONFIG_EXT_PPS_LATENCY_PS in dot-config.
   Calibration is needed to align the PPS out to PPS input in GM mode.
2. Add new variable ext_pps_latency_ps in struct spll_stats, using it
   to transfer the ext_pps_latency parameter to WRPC-SW.
3. Change SPLL_STATS_VER to 4, modify the related function.
4. (deleted from the commit)
   Add a new tool function: wrs_ext_pps_latency, which will change
   the Main PLL phase shift in GM mode, according to the parameter
   CONFIG_EXT_PPS_LATENCY_PS in dot-config. Add this new function to
   startup-mb.sh, making it autostart.

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

- clearn up section on tools
  * added rvlan-debug/status
  * names of some were commented out, uncommented
  * updated/expanded some descriptions
  * added reference to later chapters with more details
- updated/extended section on items added in v6.1

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

- fix spelling
- get rid of first-person writting
- do not say is to be used only at GSI

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>

Signed-off-by: Adam Wujek <dev_public@wujek.eu>