The previous fix didn't solved completelly this issue: Negative nano WR
time adjustement generate a big jump of the monotonic clock used in
PPSI.
The current fix solves this issue.

This library is used by wr_mon and wrs_dump_shmem to avoid duplication
of code.

- Add new option "stat" to display statistic about the evolution between
WR and Unix time
- When we set the WR time with the current UNIX time, the driver
wr_clocksource must be removed first and then reinstalled when the time
is set. If it is not done, the WR and Unix time are not well
synchronized.
- When the WR time is set, the sec and ns and set in one call. We don't
need to call twice the wr_date tool.

The WR time adjustment was not taken into account in the driver. The
side effect was a big jump sometime of the monotonic clock used in PPSI
for the calculation of the timeouts. The side effect was that many
timeouts were firing too early.
The driver registration take now into account the adjustment and also
the calculation of the offset in the read() call.

The parameter was already present in pps.conf but not yet managed by
kconfig and the ppsi.conf generator

This new parameter is used to control the configurable parameter
L1SyncOptParamsPortDS.timestampsCorrectedTx when
L1SyncBasicPortDS.optParamsEnabled is set to true.

The profile is included in the port instance name. With the new profile
"custom", the port instance name become too big. So only the two first
letters of the profile are now included in the name.

- Timeout management
- Configuration enhancement
- Erbest/ebast calculation
Note: The pp_instance structure has changed so all related programs
depending on pp_instance structure must be rebuild.

        - Add new config parameters (l1SyncRxCoherencyIsRequired,...)
        - Add new profile: CUSTOM. It will be mostly used for testing
        - Fix issue on state name: "pre_master" instead of "pre-master"

Change the format of diplayed data in order to facilitate the extraction
of data with grep like command
Signed-off-by: baujc <jean-claude.bau@cern.ch>
Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

When the WR profile is used ingressLatency and egressLacenty a set to 0
by default. This has to be done to avoid to use twice this values in the
delay calculation (ppsi + hal)

As the bitslide is already taken into account in PPSI for all protocol
extensions as the semiStaticLatency, it is no longer needed to use it in
the calculation of delta_rx_phy.

These modifications increase the precision of the displayed fraction
part of a RelativeDifference type.

- PPSI: See PPSI logs
- wrs_dump_shmem.c: new fields displayed and fix errors for negative
values in time display (TimeInterval, RelativeDifference, pp_time)
Conflicts:
	userspace/ppsi
	userspace/tools/wrs_dump_shmem.c

Conflicts:
	userspace/ppsi
	userspace/tools/wrs_dump_shmem.c

- Assembly_ppi_conf.sh script is able to generate JSON ppsi.conf format
- New parameters in ppsi.conf. Some parameters moved at ppsi instance
level
- port timing configuration in Kconfig moved in KConfig_port_timing.in
file. A file generator 'gen_kconfig_port_timing.sh'is used to generate
it.
- HAL upgraded to use the new dot-config file format. Mode ( auto,
master,...) removed from HAL.
- ppsi-pre.conf: Set empty because the new generated ppsi.conf always
define clock-class and clock accuracy.

Conflicts:
	userspace/ppsi
	userspace/tools/wrs_dump_shmem.c

- Upgrade HAL to transmit the bit-slide to HA
- Upgrade wr_mon tool to displat HA servo data
- Upgrade wrs_dump_shmem to display the right data
Conflicts:
	userspace/tools/wr_mon.c
	userspace/tools/wrs_dump_shmem.c

extensions

Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

DONE: Kconfig, assembly_ppsi_conf.sh
TODO: SNMP, DOCs, HAL?

Redefine options CONFIG_PORTXX_PARAMS in dot-config
--role={master,slave,auto,none}, keep non-wr for compatibility
--ext={WR}:{HR}, HR for future, if no ext defined use WR as default
--add extra option to disable/enable triggering errors in SNMP
--add option for delay mechanism (dm)
  p2p or e2e
  e2e default
Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

For rnabling 50ohm termination for 1-PPS input
It is set from HAL.
Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

Requires gateware synthesized with wr-switch-hdl commit:
b1b621b add bit to control WRS 1-PPS in termination

Also increase all *_SHMEM_VERSION
Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

uplift contains fixes for veryx tests
Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

    The bitslide module won't be reset when replugging the SFP and fiber, which may lead to
the wrong bitslide.

Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

As now the compilation is done only in wr-switch-sw repo.
Signed-off-by: Adam Wujek <adam.wujek@cern.ch>

Signed-off-by: Adam Wujek <adam.wujek@cern.ch>